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ALINE is an algorithm for aligning phonetic sequences, described in [1]. This module is a port of Kondrak's (2002) ALINE. It provides functions for phonetic sequence alignment and similarity analysis. These are useful in historical linguistics, sociolinguistics and synchronic phonology. ALINE has parameters that can be tuned for desired output. These parameters are: - C_skip, C_sub, C_exp, C_vwl - Salience weights - Segmental features In this implementation, some parameters have been changed from their default values as described in [1], in order to replicate published results. All changes are noted in comments. Example usage ------------- # Get optimal alignment of two phonetic sequences >>> align('θin', 'tenwis') # doctest: +SKIP [[('θ', 't'), ('i', 'e'), ('n', 'n'), ('-', 'w'), ('-', 'i'), ('-', 's')]] [1] G. Kondrak. Algorithms for Language Reconstruction. PhD dissertation, University of Toronto. Ninfi#-)<BNRbcdfghjklmnpqrstvxzçðħŋɖɟɢɣɦɬɮɰɱɲɳɴɸɹɻɽɾʀʁʂʃʈʋuʐ ʒʔʕʙʝβθχʐw) aspiratedlateralmannernasalplace retroflexsyllabicvoice) backrClongrDrErFrGroundrHrIbilabial? labiodentalgffffff?dentalg?alveolarg333333?rGg?zpalato-alveolarg?palatalgffffff?velarg333333?uvularg? pharyngealg333333?glottalg? labiovelarvowelgstop affricate fricativetrillg?g?g?)tap approximantz high vowelz mid vowelz low vowelvowel2highmidlowfrontcentralrJplusminus(2 ) rHrFrDrIrErGrCrBrKrarJrLrrg)rFrDrHrIrErGrCrBr rfrr r6r!r r"rrrr#r9rr)rr+r*r r,rr;rrr2r r1r^r0r-r=r rr>rrrr5r8r4r@rr<rr$r?r3rr:rr%r&r'r7r_r.r/rr(rrAir`rard) rFrDrHrIrErGrCrarJrLrKrByerbEøuɛuœærcarerJ) AuɨuʉuəuUoOuɔuɒIcttdd|cxkrdks nJdt|}t|}tj|dz|dzft}t d|dzD];}t d|dzD]#}||dz |ft ||dz z}|||dz ft ||dz z} ||dz |dz ft||dz ||dz z} |dkr6||dz |dz ft||dz ||dz |z} nt } |dkr6||dz |dz ft||dz ||dz |z} nt } t|| | | | d |||f<%=d|z tj |z} g}t d|dzD]O}t d|dzD]9}|||f| kr)| t||d || ||g:P|S) a Compute the alignment of two phonetic strings. :param str str1: First string to be aligned :param str str2: Second string to be aligned :type epsilon: float (0.0 to 1.0) :param epsilon: Adjusts threshold similarity score for near-optimal alignments :rtype: list(list(tuple(str, str))) :return: Alignment(s) of str1 and str2 (Kondrak 2002: 51) Nz1You need numpy in order to use the align functionr]rNz$Epsilon must be between 0.0 and 1.0.)dtypermr)np ImportErrorlenzerosfloatrange sigma_skip sigma_sub sigma_exprmaxamaxappend _retrieve)str1str2epsilonrrSrnredit1edit2edit3edit4edit5T alignmentss F/var/www/piapp/venv/lib/python3.11/site-packages/nltk/metrics/aline.pyalignr6s zMNNN ' S "H  D A D A !a%Qu---A 1a!e__ @ @q!a% @ @Aa!eQhK*T!a%["9"99EaQhK*T!a%["9"99Ea!eQUlOiQU T!a%[&I&IIE1uu!a%Q,)DQKa!eai*Q*QQ1uu!a%Q,)DQKa!eai*Q*QQ%ueQ??AadGG @ W "AJ 1a!e__LLq!a% L LAAw!||!!)Aq!Q4r"J"JKKK L c 6|||fdkr|S|dkr||dz |dz ft||dz ||dz |z|z|kro|d||dz ||dz |ft|dz |dz |t||dz ||dz |z|||||nW|dkr||dz |dz ft||dz ||dz |z|z|kro|d||dz |||dz ft|dz |dz |t||dz ||dz |z|||||n|||dz ft||dz z|z|krU|dd||dz ft||dz |t||dz z|||||n$||dz |ft||dz z|z|krT|d||dz dft|dz ||t||dz z|||||n||dz |dz ft ||dz ||dz z|z|kri|d||dz ||dz ft|dz |dz |t ||dz ||dz z||||||S)z Retrieve the path through the similarity matrix S starting at (i, j). :rtype: list(tuple(str, str)) :return: Alignment of str1 and str2 rr|rm-)rinsertrrr)rnrrrrrrouts rrrjs Aw!|| q55Qq1ua!e|_ya!ed1q519o'N'NNQRRVWWW JJq4A;QUQY8 9 9 9 AAId1q5k4A ?;;;     EEaAq1u o $q1u+tAEAI(O(OORSSWXXX JJq4A ?DQK8 9 9 9 AAId1q5k4A ?;;;    q!a%x[:d1q5k22 2Q 6! ; ; JJq3QU , - - - aQJtAE{$;$; ;Q4s S S S S q1uax[:d1q5k22 2Q 6! ; ; JJq4A;, - - - a!eQJtAE{$;$; ;Q4s S S S S q1ua!e|_ya!ed1q5kBB BQ F! K K JJq4A;QU 4 5 5 5 AAId1q5k4A;777    JrctS)zA Returns score of an indel of P. (Kondrak 2002: 54) )C_skiprs rrrs Mrcrtt||z t|z t|z S)zN Returns score of a substitution of P with Q. (Kondrak 2002: 54) )C_subdeltaVrrs rrrs- 5A;; 1 %! ,,rc|d}|d}tt||z t||z t|z tt|t|z S)zL Returns score of an expansion/compression. (Kondrak 2002: 54) rr|)C_exprrr)rrq1q2s rrrs\ 1B 1B 5B<< %2,, .1 5AbEE1R558I8I IIrcxt||}d}|D]$}|t|||t|zz }%|S)zT Return weighted sum of difference between P and Q. (Kondrak 2002: 54) r)r diffsalience)rrfeaturestotalr s rrrsI AwwH E -- aA!,, Lrct|t|}}tt||t||z S)zi Returns difference between phonetic segments P and Q for feature F. (Kondrak 2002: 52, 54) )feature_matrixabssimilarity_matrix)rrr p_features q_featuress rrrs> ,A.q0A J  A/2CJqM2RR S SSrcB|tvs |tvrtStS)zR Return relevant features for segment comparison. (Kondrak 2002: 54) ) consonantsR_cR_vrs rr r s  J!z// Jrc&|tvrdStS)zD Return vowel weight if P is vowel. (Kondrak 2002: 54) r)rC_vwlrs rrrs  Jq Lrc$dtdD}|D]h}t|d|dd}d|D}d|}t |dd|dd|id S) zq A demonstration of the result of aligning phonetic sequences used in Kondrak's (2002) dissertation. c8g|]}|dS),)split).0pairs r zdemo..s" A A ADJJsOO A A Ar rr|c8g|]}d|dd|ddS)(rz, r|))rrts rrzdemo..s4<<rs> BBB  eEll    === @      %%4% c %  %  %t%s% S% c%#%s%#% T%  C!%"#%$%%& S'%(        I%%%R       i   i   i ,  -i @  Ai T   Ui h   ii |  }i P   Qi d  ei x  yi L  Mi `   ai t   ui H  Ii \   ]i p  qi D   Ei i X   Yi l   mi @   Ai T  Ui h   ii |  }i P  Qi d   ei x  yi L   Mi `   ai t   ui H    I i \   ] i p   q i D    E i X    Y i i i l   m i @   A i T  "  U i h  "  i i |    } i P    Q i d    e i x    y i L   M i `    a i t    u i H   Ii \   ]i p   qi D  Ei X   Yi l   mi i i @   Ai T   Ui h   ii |   }i P  Qi d   ei x  yi L  Mi b  ci ~  i Z  [i v  wi R   Si n   oi J   Ki f   gi B  Ci i `                      wi i i \1111h666r---JJJ   TTT 6 6 6J X zDFFFFFs